This is an R Markdown website, created by Jeff Goldsmith for IWAFDA.
In the short course, we’ll actively use the packages grpreg and tidyverse; at times, we’ll use refund, refund.shiny, and vbvs.concurrent. Code to install the packages follows, and version information about each of these packages and their dependencies is at the bottom of this page.
install.packages(c("grpreg", "tidyverse", "refund", "refund.shiny"))The versions of both refund.shiny and vbvs.concurrent that I’ll be using to demonstrate were installed from GitHub using
install(devtools)
devtools::install_github("refunders/refund.shiny")
devtools::install_github("jeff-goldsmith/vbvs.concurrent")Versions of key packages:
devtools::session_info(c("grpreg", "refund", "refund.shiny", "vbvs.concurrent"))## Session info -------------------------------------------------------------## setting value
## version R version 3.2.4 (2016-03-10)
## system x86_64, darwin13.4.0
## ui X11
## language (EN)
## collate en_US.UTF-8
## tz Europe/Madrid
## date 2017-03-23## Packages -----------------------------------------------------------------## package * version date
## abind 1.4-5 2016-07-21
## assertthat 0.1 2013-12-06
## base64enc 0.1-3 2015-07-28
## BH 1.60.0-2 2016-05-07
## BiocGenerics 0.16.1 2015-11-06
## boot 1.3-18 2016-02-23
## coda 0.18-1 2015-10-16
## colorspace 1.2-6 2015-03-11
## curl 1.2 2016-08-13
## DBI 0.5-1 2016-09-10
## dichromat 2.0-0 2013-01-24
## digest 0.6.12 2017-01-27
## dplyr 0.5.0 2016-06-24
## fda 2.4.4 2014-12-16
## FNN 1.1 2013-07-31
## gamm4 0.2-4 2016-09-17
## ggplot2 2.2.1 2016-12-30
## graph 1.48.0 2015-10-14
## gridExtra 2.2.1 2016-02-29
## grpreg 3.0-2 2016-07-11
## gtable 0.2.0 2016-02-26
## hexbin 1.27.1 2015-08-19
## htmltools 0.3.5 2016-03-21
## htmlwidgets 0.7 2016-08-02
## httpuv 1.3.3 2015-08-04
## httr 1.2.1 2016-07-03
## jsonlite 1.3 2017-02-28
## labeling 0.3 2014-08-23
## lattice 0.20-33 2015-07-14
## lazyeval 0.2.0 2016-06-12
## lme4 1.1-12 2016-04-16
## magic 1.5-6 2013-11-20
## magrittr 1.5 2014-11-22
## MASS 7.3-45 2015-11-10
## Matrix 1.2-4 2016-03-02
## MatrixModels 0.4-1 2015-08-22
## mcmc 0.9-4 2015-07-17
## MCMCpack 1.3-5 2016-03-11
## mgcv 1.8-12 2016-03-03
## mime 0.5 2016-07-07
## minqa 1.2.4 2014-10-09
## munsell 0.4.3 2016-02-13
## nlme 3.1-126 2016-03-14
## nloptr 1.0.4 2014-08-04
## openssl 0.9.4 2016-05-25
## pbs 1.1 2013-06-08
## plotly 4.5.6 2016-11-12
## plyr 1.8.4 2016-06-08
## purrr 0.2.2 2016-06-18
## quantreg 5.21 2016-02-13
## R6 2.1.2 2016-01-26
## RColorBrewer 1.1-2 2014-12-07
## Rcpp 0.12.10 2017-03-19
## RcppEigen 0.3.2.8.1 2016-03-01
## refund 0.1-16 2016-08-03
## refund.shiny 0.3.0 2017-03-22
## reshape2 1.4.2 2016-10-22
## Rgraphviz 2.14.0 2015-10-14
## RLRsim 3.1-3 2016-11-04
## scales 0.4.1 2016-11-09
## shiny 1.0.0 2017-01-12
## sourcetools 0.1.5 2016-09-15
## SparseM 1.7 2015-08-15
## stringi 1.1.2 2016-10-01
## stringr 1.1.0 2016-08-19
## tibble 1.2 2016-08-26
## tidyr 0.6.1 2017-01-10
## vbvs.concurrent 0.1 2017-03-22
## viridisLite 0.1.3 2016-03-12
## xtable 1.8-2 2016-02-05
## yaml 2.1.14 2016-11-12
## source
## CRAN (R 3.2.5)
## CRAN (R 3.2.0)
## CRAN (R 3.2.0)
## CRAN (R 3.2.5)
## Bioconductor
## CRAN (R 3.2.4)
## CRAN (R 3.2.0)
## CRAN (R 3.2.0)
## CRAN (R 3.2.5)
## CRAN (R 3.2.5)
## CRAN (R 3.2.0)
## cran (@0.6.12)
## CRAN (R 3.2.5)
## CRAN (R 3.2.0)
## CRAN (R 3.2.0)
## cran (@0.2-4)
## cran (@2.2.1)
## Bioconductor
## CRAN (R 3.2.4)
## CRAN (R 3.2.5)
## CRAN (R 3.2.3)
## CRAN (R 3.2.0)
## CRAN (R 3.2.4)
## CRAN (R 3.2.5)
## CRAN (R 3.2.0)
## CRAN (R 3.2.5)
## cran (@1.3)
## CRAN (R 3.2.0)
## CRAN (R 3.2.4)
## CRAN (R 3.2.5)
## CRAN (R 3.2.5)
## CRAN (R 3.2.0)
## CRAN (R 3.2.0)
## CRAN (R 3.2.4)
## CRAN (R 3.2.4)
## CRAN (R 3.2.0)
## CRAN (R 3.2.0)
## CRAN (R 3.2.4)
## CRAN (R 3.2.4)
## CRAN (R 3.2.5)
## CRAN (R 3.2.0)
## CRAN (R 3.2.3)
## CRAN (R 3.2.4)
## CRAN (R 3.2.0)
## CRAN (R 3.2.5)
## CRAN (R 3.2.0)
## CRAN (R 3.2.5)
## CRAN (R 3.2.5)
## CRAN (R 3.2.5)
## CRAN (R 3.2.3)
## CRAN (R 3.2.3)
## CRAN (R 3.2.0)
## Github (RcppCore/Rcpp@5a71cf6)
## CRAN (R 3.2.4)
## CRAN (R 3.2.5)
## Github (refunders/refund.shiny@6e8ffe7)
## cran (@1.4.2)
## Bioconductor
## cran (@3.1-3)
## cran (@0.4.1)
## cran (@1.0.0)
## cran (@0.1.5)
## CRAN (R 3.2.0)
## cran (@1.1.2)
## CRAN (R 3.2.5)
## CRAN (R 3.2.5)
## cran (@0.6.1)
## Github (jeff-goldsmith/vbvs.concurrent@e6b6974)
## CRAN (R 3.2.4)
## CRAN (R 3.2.3)
## cran (@2.1.14)